interop

This module parses the output from the InterOp Summary executable and creates a table view. The aim is to replicate the Run & Lane Metrics table from the Illumina Basespace interface. The executable used can easily be installed from the BioConda channel using conda install -c bioconda illumina-interop.

The MultiQC interop module can parse the outputs of the interop_summary and interop_index-summary executables. Note that these must be run with the --csv=1 option.